Software Version	Manual	Changelog
SIOMICS V1.4 (For Windows) SIOMICS V1.4 (For Linux) (Mar.22,2014)	Manual V1.4	(1) Make SIOMICS compatible for Java 6 and Java 7. (2) Changed the multiple comparison correction. (3) Add X.motifs.tfbs.inModule as one of the predictions.
SIOMICS Extension- Beta Version 2 (For Windows) SIOMICS Extension - Beta Version 2 (For Linux) (Mar.20,2014)	Manual_Extension(Beta Version)	(1) The length of predicted motifs can be automatically adjusted. (2) Added 3 more options -e -t -y to the software to indicate whether the extension, comparison or visualization will be performed. (3) Added More details about extension results. (7 results files for extension were provided).
SIOMICS V1.2 (For Windows) SIOMICS V1.2 (For Linux) (Jul.16,2013)	Manual V1.2	The initial distribution version of SIOMICS

Note: Please use the most updated SIOMICS version for more enabled features. If you want to get automatically adjusted motif instead of motifs with specific length, you can try SIOMICS_Extension version. The Extension version has been tested in some Chip-Seq data but it's still under testing. If you have encountered any bugs, please report to siomicsbugs@gmail.com