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Ding J, Hu H, Li X. NIM, A novel computational method for predicting nuclear-encoded chloroplast proteins, International Conference On Bioinformatics and Computational Biology. 2013.
Ding J, Cai X, Wang Y, Hu H, Li X. ChIPModule: Systematic discovery of transcription factors and their cofactors from ChIP-seq data, Pac Symp Biocomput. 2013.
Ding J, Li X, Hu H. Systematic discovery of cis-regulatory elements in Chlamydomonas reinhardtii genome using comparative genomics, Plant Physiology, doi: http://dx.doi.org/10.1104/pp.112.200840, 2012.
Wang Y, Ding J, Daniell H, Hu H, Li X. Motif analysis unveils the possible co-regulation of chloroplast genes and nuclear genes encoding chloroplast proteins. Plant Mol Biol, 80(2): 177-187. doi:10.1007/s11103-012-9938-6, 2012.
Ruppert SM , Chehtane M , Zhang G , Hu H , Li X , Khaled AR. JunD/AP-1-Mediated gene expression promotes lymphocyte growth dependent on Interleukin-7 signal transduction. PLoS ONE 7(2): e32262. doi:10.1371/journal.pone.0032262, 2012.
Li W, Hu H, Huang Y, Li H, Mehan MR, Nunez-Iglesias J, Xu M, Yan X, Zhou XJ. Pattern mining across many massive networks. Book Chapter in Functional Coherence of Biological Networks. Springer, M. Koyuturk, S. Subramaniam, and A. Grama Eds., 137-170, 2012.
Ding J, Hu H, Li X. Thousands of cis-regulatory sequence combinations are shared by Arabidopsis and Poplar. Plant Physiology, doi: http://dx.doi.org/10.1104/pp.111.186080, 2011.
Wang Y, Li X, Hu H. Transcriptional regulation of co-expressed microRNA target genes. Genomics. doi:10.1016/j.ygeno.2011.09.004, 2011.
Li W, Hu H, Huang Y, Li H, Mehan MR, Nunez-Iglesias J, Xu M, Yan X, and Zhou XJ. Frequent pattern discovery in multiple biological networks: algorithms and applications. Statistics in Biosciences, p. 1-20. DOI: 10.1007/s12561-011-9047-0, 2011.
Hu H. Mining patterns in disease classification forests. Journal of Biomedical Informatics, 43(5):820-7, 2010.
Cai X, Hou L, Su N, Hu H, Deng M, Li X. Systematic identification of conserved motif modules in the human genome. BMC Genomics, 11:567, 2010.
Hu H, Li X. Whole genome identification of target genes of transcription factors. The 2010 International Conference On Bioinformatics and Biomedical Technology, Chengdu, China. April 16-18, 2010.
Hu H, Li X. Hierarchical order of gene expression levels. The 2010 International Conference On Bioinformatics and Biomedical Technology, Chengdu, China. April 16-18, 2010.
Hu H, Li X. Transcription factor binding site identification by phylogenetic footprinting. Book Chapter in Frontiers in Computational and Systems Biology, 113-132, 2010.
Cai X, Hu H, Li X. A new measurement of sequence conservation. BMC Genomics, 10:623, 2009.
Hu H. An
efficient method to identify conditionally activated transcription
factors and their corresponding signal transduction pathway segments. Bioinformatics and Biology Insights, 3:179-187, 2009.
Hu J, Hu H, Li X. MOPAT: a graph-based method to predict recurrent cis-regulatory modules from known motifs. Nucleic Acids Res, 36(13):4488-4497, 2008.
Hu H, Li X. Networking Pathways unveils Association between Obesity and Non-Insulin Dependent Diabetes Mellitus. Pac Symp Biocomput.13: 255-66, 2008.
Hu H, Li X. Transcriptional regulation in eukaryotic ribosomal protein genes, Genomics. 90(4):421-3, 2007.
Cai X, Hu H, Li X. Tree Gibbs Sampler: Identifying Conserved Motifs without Aligning Orthologous Sequences. Bioinformatics. 23(15):2013-4, 2007.
Huang Y, Li H, Hu H, Yan X, Waterman MS, Huang H, Zhou XJ. Systematic Discovery of Functional Modules and Context-Specific Functional Annotation of Human Genome. Bioinformatics, 23(13):i222-i229, 2007.
Pan F, Kamath K, Zhang K, Pulapura S, Achar A, Nunez-Iglesias J, Huang Y, Yan X, Han J, Hu H, Xu M, Zhou XJ. Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data. Bioinformatics. 22(13):1665-7, 2006.
Hu H, Yan X, Huang Y, Han J, Zhou XJ. Mining coherent dense subgraphs across massive biological networks for functional discovery. Bioinformatics. 21 Suppl. 1, i213-i221, 2005.
Pan F, Kamath Kiran, Hu H, Huang Y, Zhang K, Xu M, Yan X,
Han J and Zhou XJ. BioArrayMiner: A software package for integrative
analysis of cross-platform and cross-species microarray data.
Bioinformatics (ISMB 2005).
Xue L, Sun X, Yang L, Hu H, Li W. Study on the control
system of casing-bag machine hand. New Technology & New Process 6:
11-13, 1999.
Sun X, Hu H, Pang J, Xue L. Physical Realization of
Palletizing Robot Computer Control System. Journal of Beijing Institute
of Petro-Chemical Technology 2:1008-2565, 1999.
Xue L, Sun X, Yang L, Zhang S, Hu H. Robot for sheathing
bags and PLC control, Low Voltage Apparatus 5: 38-39+64, 1998.
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