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Ding J , Hu H, Li X. Thousands of cis-regulatory sequence combinations
are shared by Arabidopsis and Poplar. Plant Physiology, 2011.
[link]
Wang Y, Li X, Hu H. Transcriptional regulation of co-expressed
microRNA target genes. Genomics. doi:10.1016/j.ygeno.2011.09.004,
2011.[link]
Li W, Hu H, Huang Y, Li H, Mehan MR, Nunez-Iglesias J, Xu M, Yan
X, and Zhou XJ. Frequent pattern discovery in multiple biological
networks: algorithms and applications. Statistics in Biosciences,
p. 1-20. DOI: 10.1007/s12561-011-9047-0, 2011.
Li W, Hu H, Huang Y, Li H, Mehan MR, Nunez-Iglesias J, Xu M, Yan
X, Zhou XJ. Pattern Mining Across Many Massive Networks. Functional
Coherence of Biological Networks. (M. Koyuturk, S. Subramaniam,
and A. Grama Eds.), Springer, in press.
Hu H. Mining patterns in disease classification forests. Journal
of Biomedical Informatics, 43(5):820-7, 2010.[link]
Cai X, Hou L, Su N, Hu H, Deng M, Li X. Systematic identification
of conserved motif modules in the human genome. BMC Genomics,
11:567, 2010.[link]
Hu H, Li X. Whole genome identification of target genes of transcription
factors. The 2010 International Conference On Bioinformatics and
Biomedical Technology, Chengdu, China. April 16-18, 2010.
Hu H, Li X. Hierarchical order of gene expression levels . The
2010 International Conference On Bioinformatics and Biomedical
Technology, Chengdu, China. April 16-18, 2010.
Hu H, Li X. Transcription factor binding site identification by
phylogenetic footprinting. Book Chapter in Frontiers in Computational
and Systems Biology, 113-132, 2010.
Cai X, Hu H, Li X. A new measurement of sequence conservation.
BMC Genomics, 10:623, 2009.[link]
Hu H. An efficient method to identify conditionally activated
transcription factors and their corresponding signal transduction
pathway segments. Bioinformatics and Biology Insights, 3:179-187,
2009. [link]
Hu J, Hu H, Li X. MOPAT: a graph-based method to predict recurrent
cis-regulatory modules from known motifs. Nucleic Acids Res, 36(13):4488-4497,
2008. [link]
Hu H, Li X. Networking Pathways unveils Association between Obesity
and Non-Insulin Dependent Diabetes Mellitus. Pac Symp Biocomput.13:
255-66, 2008.[link]
Hu H, Li X. Transcriptional regulation in eukaryotic ribosomal
protein genes, Genomics. 90(4):421-3, 2007.[link]
Cai X, Hu H, Li X. Tree Gibbs Sampler: Identifying Conserved Motifs
without Aligning Orthologous Sequences. Bioinformatics. 23(15):2013-4,
2007. [link]
Huang Y, Li H, Hu H, Yan X, Waterman MS, Huang H, Zhou XJ. Systematic
Discovery of Functional Modules and Context-Specific Functional
Annotation of Human Genome. Bioinformatics, 23(13):i222-i229,
2007. [link]
Pan F, Kamath K, Zhang K, Pulapura S, Achar A, Nunez-Iglesias
J, Huang Y, Yan X, Han J, Hu H, Xu M, Zhou XJ. Integrative Array
Analyzer: a software package for analysis of cross-platform and
cross-species microarray data. Bioinformatics. 22(13):1665-7,
2006. [link]
Hu H, Yan X, Huang Y, Han J, Zhou XJ. Mining coherent dense subgraphs
across massive biological networks for functional discovery. Bioinformatics.
21 Suppl. 1, i213-i221, 2005. [link]
Pan F, Kamath Kiran, Hu H, Huang Y, Zhang K, Xu M, Yan X, Han
J and Zhou XJ. BioArrayMiner: A software package for integrative
analysis of cross-platform and cross-species microarray data.
Bioinformatics (ISMB 2005).
Xue L, Sun X, Yang L, Hu H, Li W. Study on the control system
of casing-bag machine hand. New Technology & New Process 6: 11-13,
1999.
Sun X, Hu H, Pang J, Xue L. Physical Realization of Palletizing
Robot Computer Control System. Journal of Beijing Institute of
Petro-Chemical Technology 2:1008-2565, 1999.
Xue L, Sun X, Yang L, Zhang S, Hu H. Robot for sheathing bags
and PLC control, Low Voltage Apparatus 5: 38-39+64, 1998.
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